.. module:: cellrefiner
.. automodule:: cellrefiner
   :noindex:

API
==================================

preprocessing: pp
-----------------

.. module:: cellrefiner.pp
.. currentmodule:: cellrefiner

.. autosummary::
   :toctree: .

   pp.spatial_mapping
   pp.ligand_receptor_database
   pp.filter_lr_database

tools: tl
-----------

.. module:: cellrefiner.tl
.. currentmodule:: cellrefiner

.. autosummary::
   :toctree: .

   tl.cell_shape_modeling
   tl.contact_communication
   tl.cluster_communication

plotting: pl
------------

.. module:: cellrefiner.pl
.. currentmodule:: cellrefiner

.. autosummary::
   :toctree: .

   pl.plot_cell_shape
   pl.plot_contact_signal